Package: santaR
Title: Short Asynchronous Time-Series Analysis
Version: 1.2.4
Date: 2024-02-26
Authors@R: c(
	person("Arnaud", "Wolfer", email = "adwolfer@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5856-3218")),
	person("Timothy", "Ebbels", email = "t.ebbels@imperial.ac.uk", role = "ctb"),
	person("Joe", "Cheng", email = "joe@rstudio.com", role = c("ctb"), comment = "Shiny javascript custom-input control"))
Description: A graphical and automated pipeline for the analysis of
        short time-series in R ('santaR'). This approach is designed to
        accommodate asynchronous time sampling (i.e. different time
        points for different individuals), inter-individual
        variability, noisy measurements and large numbers of variables.
        Based on a smoothing splines functional model, 'santaR' is able
        to detect variables highlighting significantly different
        temporal trajectories between study groups. Designed initially
        for metabolic phenotyping, 'santaR' is also suited for other
        Systems Biology disciplines. Command line and graphical
        analysis (via a 'shiny' application) enable fast and parallel
        automated analysis and reporting, intuitive visualisation and
        comprehensive plotting options for non-specialist users.
Depends: R (>= 4.2)
License: GPL-3
BugReports: https://github.com/adwolfer/santaR/issues/new
URL: https://github.com/adwolfer/santaR,
        https://adwolfer.github.io/santaR/
Encoding: UTF-8
LazyData: true
Imports: plyr (>= 1.8.9), foreach (>= 1.5.2), doParallel (>= 1.0.17),
        pcaMethods (>= 1.92.0), ggplot2 (>= 3.5.0), gridExtra (>= 2.3),
        reshape2 (>= 1.4.3), iterators (>= 1.0.9), shiny (>= 1.8.0),
        bslib, DT (>= 0.9)
biocViews: pcaMethods (>= 1.92.0)
Suggests: knitr, rmarkdown, pander, R.rsp, testthat
VignetteBuilder: knitr, R.rsp
RoxygenNote: 7.3.1
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://adwolfer.r-universe.dev
Date/Publication: 2024-03-06 23:08:13 UTC
RemoteUrl: https://github.com/adwolfer/santar
RemoteRef: HEAD
RemoteSha: 6f7c7cdc8d24cfb8d06683b54f468b356962d412
NeedsCompilation: no
Packaged: 2026-07-16 05:35:39 UTC; root
Author: Arnaud Wolfer [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5856-3218>),
  Timothy Ebbels [ctb],
  Joe Cheng [ctb] (Shiny javascript custom-input control)
Maintainer: Arnaud Wolfer <adwolfer@gmail.com>