{ "_id": "6a1f0bd9b401979e7341c87d", "Package": "santaR", "Title": "Short Asynchronous Time-Series Analysis", "Version": "1.2.4", "Date": "2024-02-26", "Authors@R": "c(\nperson(\"Arnaud\", \"Wolfer\", email = \"adwolfer@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5856-3218\")),\nperson(\"Timothy\", \"Ebbels\", email = \"t.ebbels@imperial.ac.uk\", role = \"ctb\"),\nperson(\"Joe\", \"Cheng\", email = \"joe@rstudio.com\", role = c(\"ctb\"), comment = \"Shiny javascript custom-input control\"))", "Description": "A graphical and automated pipeline for the analysis of\nshort time-series in R ('santaR'). This approach is designed to\naccommodate asynchronous time sampling (i.e. different time\npoints for different individuals), inter-individual\nvariability, noisy measurements and large numbers of variables.\nBased on a smoothing splines functional model, 'santaR' is able\nto detect variables highlighting significantly different\ntemporal trajectories between study groups. Designed initially\nfor metabolic phenotyping, 'santaR' is also suited for other\nSystems Biology disciplines. Command line and graphical\nanalysis (via a 'shiny' application) enable fast and parallel\nautomated analysis and reporting, intuitive visualisation and\ncomprehensive plotting options for non-specialist users.", "License": "GPL-3", "BugReports": "https://github.com/adwolfer/santaR/issues/new", "URL": "https://github.com/adwolfer/santaR,\nhttps://adwolfer.github.io/santaR/", "Encoding": "UTF-8", "LazyData": "true", "biocViews": "pcaMethods (>= 1.92.0)", "VignetteBuilder": "knitr, R.rsp", "RoxygenNote": "7.3.1", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev", "Repository": "https://adwolfer.r-universe.dev", "Date/Publication": "2024-03-06 23:08:13 UTC", "RemoteUrl": "https://github.com/adwolfer/santar", "RemoteRef": "HEAD", "RemoteSha": "6f7c7cdc8d24cfb8d06683b54f468b356962d412", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-17 09:44:29 UTC", "User": "root" }, "Author": "Arnaud Wolfer [aut, cre] (ORCID:\n),\nTimothy Ebbels [ctb],\nJoe Cheng [ctb] (Shiny javascript custom-input control)", "Maintainer": "Arnaud Wolfer ", "MD5sum": "1c99f2c097dacbde0e6a0d59795760c3", "_user": "adwolfer", "_type": "src", "_file": "santaR_1.2.4.tar.gz", "_fileid": "18280f1dec8a0cf94f4482221d819bcd4ebf4b62624ab8c0e25d2056d56abd95", "_filesize": 5742992, "_sha256": "18280f1dec8a0cf94f4482221d819bcd4ebf4b62624ab8c0e25d2056d56abd95", "_created": "2026-05-17T09:44:29.000Z", "_published": "2026-06-02T16:59:05.192Z", "_distro": "noble", "_jobs": [ { "job": 79126391815, "time": 204, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7041356404" }, { "job": 79126392056, "time": 166, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7041352244" }, { "job": 79126392042, "time": 145, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7041360107" }, { "job": 79126391899, "time": 158, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7041350805" }, { "job": 79126391123, "time": 223, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7041332247" }, { "job": 79126391019, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7364446367" }, { "job": 79126392062, "time": 133, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7041348367" }, { "job": 79126392264, "time": 103, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7041344854" }, { "job": 79126392192, "time": 127, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7041347694" } ], "_buildurl": "https://github.com/r-universe/adwolfer/actions/runs/25987365908", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/adwolfer/santar", "_commit": { "id": "6f7c7cdc8d24cfb8d06683b54f468b356962d412", "author": "Arnaud Wolfer ", "committer": "Arnaud Wolfer ", "message": "remove pages workflow due to pdf\n", "time": 1709766493 }, "_maintainer": { "name": "Arnaud Wolfer", "email": "adwolfer@gmail.com", "login": "adwolfer", "orcid": "0000-0001-5856-3218", "description": "", "uuid": 7688243 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2", "role": "Depends" }, { "package": "plyr", "version": ">= 1.8.9", "role": "Imports" }, { "package": "foreach", "version": ">= 1.5.2", "role": "Imports" }, { "package": "doParallel", "version": ">= 1.0.17", "role": "Imports" }, { "package": "pcaMethods", "version": ">= 1.92.0", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.5.0", "role": "Imports" }, { "package": "gridExtra", "version": ">= 2.3", "role": "Imports" }, { "package": "reshape2", "version": ">= 1.4.3", "role": "Imports" }, { "package": "iterators", "version": ">= 1.0.9", "role": "Imports" }, { "package": "shiny", "version": ">= 1.8.0", "role": "Imports" }, { "package": "bslib", "role": "Imports" }, { "package": "DT", "version": ">= 0.9", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "pander", "role": "Suggests" }, { "package": "R.rsp", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "adwolfer", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "pcamethods (>= 1.92.0)" ], "_stars": 11, "_contributors": [ { "user": "adwolfer", "count": 54, "uuid": 7688243 }, { "user": "teunbrand", "count": 1, "uuid": 49372158 } ], "_userbio": { "uuid": 7688243, "type": "user", "name": "Arnaud M. 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